Central Data Repository with Data Warehousing

Note: This recipe is in a pre-release alpha stage. It's usable but do so at your own risk.

This recipe sets up an HIE that does the following:

  • Accept FHIR bundles submitted securely through an IOL (OpenHIM)

  • Stores Clinical FHIR data to a FHIR store (HAPI FHIR)

  • Stores Patient Demographic data to an MPI (JeMPI)

  • Pushes FHIR resources to Kafka for the reporting pipeline (and other systems) to use

  • Pulls FHIR data out of Kafka and maps it to flattened tables in the Data Warehouse (Clickhouse)

  • Allows for the Data Warehouse data to be visualised via a BI tool (Apache Superset)

To launch this package in dev mode copy and paste this into your terminal in a new folder (ensure you have the instant CLI installed):

wget https://github.com/jembi/platform/releases/latest/download/cdr-dw.env && \
wget https://github.com/jembi/platform/releases/latest/download/config.yaml && \
instant package init -p cdr-dw --dev

Services

When deployed in --dev mode the location of the UIs will be as follows:

Service
URL
Auth

OpenHIM

Test SSO user: u: test p: dev_password_only

JeMPI

Test SSO user: u: test p: dev_password_only

Superset

Test SSO user: u: test p: dev_password_only

Grafana

Test SSO user: u: test p: dev_password_only

Keycloak

u: admin p: dev_password_only

Extra UIs only exposed in --dev mode:

Service
URL
Auth

Kafdrop

none

HAPI FHIR

none

Example use

Use the following example postman collection to see interaction you cna have with the system and see how the system reacts.

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